Exactly, step by step.
One thing I do in cases like this is chuck some air into the cylinder at TDC and listen to where the sound comes out. Valve leaks come out the carb or tailpipe, rings are heard from an oil cap or PCV opening. Make sure your breaker bar is off the crank, just in case...
Is one cyl. much worse? Compression test narrows down the bad hole...
I knew about the 1000 miles, that doesn't mean anything. Many factors here.
One way of proving the rings are seated is to note the temp gauge under those break-in miles. When you load it real good, the temp rises.
Eventually you will see that the range of temps (rise and fall) will get closer. This is a good indicator of ring break-in.
If the vehicle won't ever get raced, I've recommended a procedure...
Get as much weight packed into it and take it on a long trip, such as a freeway loop. Alternate loading it, enough to watch the temp gauge climb, then easy to cool it. You will see when it's "broken -in".
Have you run it really hot since the rebuild?